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The banana genome hub: a community database for genomics in the Musaceae

dc.contributor.authorDroc, G.
dc.contributor.authorMartin, G.
dc.contributor.authorGuignon, V.
dc.contributor.authorSummo, M.
dc.contributor.authorSempere, G.
dc.contributor.authorDurant, E.
dc.contributor.authorSoriano, A.
dc.contributor.authorBaurens, F.C.
dc.contributor.authorCenci, A.
dc.contributor.authorBreton, C.
dc.contributor.authorShah, T.
dc.contributor.authorAury, J.M.
dc.contributor.authorGe, X.J.
dc.contributor.authorHarrison, P.H.
dc.contributor.authorYahiaoui, N.
dc.contributor.authorD'Hont, A.
dc.contributor.authorRouard, M.
dc.date.accessioned2023-04-20T10:40:16Z
dc.date.available2023-04-20T10:40:16Z
dc.date.issued2022-01-05
dc.identifier.citationDroc, G., Martin, G., Guignon, V., Summo, M., Sempéré, G., Durant, E., ... & Rouard, M. (2022). The banana genome hub: a community database for genomics in the Musaceae. Horticulture Research, 9: uhac221, 1-10.
dc.identifier.issn2662-6810
dc.identifier.urihttps://hdl.handle.net/20.500.12478/8148
dc.description.abstractThe Banana Genome Hub provides centralized access for genome assemblies, annotations, and the extensive related omics resources available for bananas and banana relatives. A series of tools and unique interfaces are implemented to harness the potential of genomics in bananas, leveraging the power of comparative analysis, while recognizing the differences between datasets. Besides effective genomic tools like BLAST and the JBrowse genome browser, additional interfaces enable advanced gene search and gene family analyses including multiple alignments and phylogenies. A synteny viewer enables the comparison of genome structures between chromosome-scale assemblies. Interfaces for differential expression analyses, metabolic pathways and GO enrichment were also added. A catalogue of variants spanning the banana diversity is made available for exploration, filtering, and export to a wide variety of software. Furthermore, we implemented new ways to graphically explore gene presence-absence in pangenomes as well as genome ancestry mosaics for cultivated bananas. Besides, to guide the community in future sequencing efforts, we provide recommendations for nomenclature of locus tags and a curated list of public genomic resources (assemblies, resequencing, high density genotyping) and upcoming resources—planned, ongoing or not yet public. The Banana Genome Hub aims at supporting the banana scientific community for basic, translational, and applied research and can be accessed at https://banana-genome-hub.southgreen.fr.
dc.format.extent1-10
dc.language.isoen
dc.subjectDatabases
dc.subjectGenomes
dc.subjectInformation Systems
dc.subjectEvolution
dc.subjectBiodiversity
dc.subjectBananas
dc.titleThe banana genome hub: a community database for genomics in the Musaceae
dc.typeJournal Article
cg.contributor.crpMaize
cg.contributor.crpRoots, Tubers and Bananas
cg.contributor.crpPolicies, Institutions and Markets
cg.contributor.affiliationCentre de Coopération Internationale en Recherche Agronomique pour le Développement
cg.contributor.affiliationUniversite de Montpellier
cg.contributor.affiliationFrench Institute of Bioinformatics
cg.contributor.affiliationBioversity International
cg.contributor.affiliationSyngenta Seeds SAS, France
cg.contributor.affiliationInternational Institute of Tropical Agriculture
cg.contributor.affiliationUniversité Paris-Saclay
cg.contributor.affiliationChinese Academy of Sciences
cg.contributor.affiliationUniversity of Leicester
cg.coverage.regionACP
cg.coverage.hubEastern Africa Hub
cg.researchthemeBiometrics
cg.identifier.bibtexciteidDROC:2022
cg.isijournalISI Journal
cg.authorship.typesCGIAR and developing country institute
cg.iitasubjectAgronomy
cg.iitasubjectBanana
cg.iitasubjectBiodiversity
cg.iitasubjectFood Security
cg.iitasubjectPlant Breeding
cg.iitasubjectPlant Production
cg.journalHorticulture Research
cg.notesOpen Access Journal; Published online: 28 Sep 2022
cg.accessibilitystatusOpen Access
cg.reviewstatusPeer Review
cg.usagerightslicenseCreative Commons Attribution 4.0 (CC BY 0.0)
cg.targetaudienceScientists
cg.identifier.doihttps://dx.doi.org/10.1093/hr/uhac221
cg.iitaauthor.identifierTrushar Shah: 0000-0002-0091-7981
cg.futureupdate.requiredNo
cg.identifier.issueuhac221
cg.identifier.volume9


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