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    Characterization of Hoplolaimus seinhorsti and Hoplolaimus pararobustus (Tylenchina: Hoplolaimidae) from banana, with phylogeny and species delineation in the genus Hoplolaimus

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    Journal Article (2.456Mb)
    Date
    2023-05-23
    Author
    Olajide, E.
    Singh, P.R.
    Kolombia, Y.A.
    Rumbarar, M.K.
    Couvreur, M.
    Bert, W.
    Type
    Journal Article
    Review Status
    Peer Review
    Target Audience
    Scientists
    Metadata
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    Abstract/Description
    The morphological and molecular characterisations of two lance nematode species isolated from the rhizosphere of banana, Hoplolaimus seinhorsti and H. pararobustus, are provided based on an integrative study that includes light and scanning electron microscopy, phylogenetic analysis and two tree-based molecular species delimitation methods (GMYC and bPTP). Nineteen new sequences were obtained, including 5 partial 18S rRNA, 6 D2-D3 of 28S rRNA, 1 ITS rRNA and 7 COI mtDNA (the first COI sequences of H. seinhorsti and H. pararobustus), and an updated morphological character comparison of 37 Hoplolaimus species is presented. The tree-based molecular species-delimitation approaches employed gave markedly differing results, and also showed remarkable discrepancies among the investigated genes, although the bPTP output was found to agree well with established morphological species delimitations. Both species-delimitation approaches did, however, provide the same output for the COI mtDNA sequences, and the COI mtDNA gene sequence was also found to correspond better to established morphological species. It is therefore recommended by this paper as representing the most suitable barcode marker for Hoplolaimus species identification. This integrative study also resulted in the corrective reassignment of 17 gene sequences that were previously unidentified or incorrectly classified, as well as concluding that H. pararobustus consists of two cryptic species.
    https://doi.org/10.2478/jofnem-2023-0019
    Multi standard citation
    Permanent link to this item
    https://hdl.handle.net/20.500.12478/8258
    Digital Object Identifier (DOI)
    https://doi.org/10.2478/jofnem-2023-0019
    IITA Subjects
    Agronomy; Banana; Disease Control; Food Security; Genetic Improvement; Plant Breeding; Plant Diseases; Plant Ecology; Plant Genetic Resources; Plant Health; Plant Production
    Agrovoc Terms
    Bananas; Hoplolaimus; Nematodes; Morphology; Phylogeny; Plant Nematodes; Taxanomy; DNA
    Regions
    Africa; West Africa
    Countries
    Nigeria
    Hubs
    Headquarters and Western Africa Hub
    Journals
    Journal of Nematology
    Collections
    • Journal and Journal Articles5286
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